PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026395m
Common NameCICLE_v10026105mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 235aa    MW: 26060.1 Da    PI: 9.1984
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026395mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-3079138159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed++v++ tYegeHnh+
  Ciclev10026395m  79 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSVEDQSVLVATYEGEHNHP 138
                      58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-2974140IPR003657WRKY domain
PROSITE profilePS5081127.23274140IPR003657WRKY domain
SuperFamilySSF1182901.96E-2576140IPR003657WRKY domain
SMARTSM007744.5E-3479139IPR003657WRKY domain
PfamPF031062.0E-2480138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDYMSKNPEI SKEVFISSSK KRKSESSNND NNVALTMGNS ESSSTDEESC KKPREEHIKA  60
KISRVHYRTE PSDTTSLVVK DGYQWRKYGQ KVTRDNPSPR AYFKCSFAPS CPVKKKVQRS  120
VEDQSVLVAT YEGEHNHPLP CQMDAASGST SRCVTAGSVP CSTGQTITLD LTRSNNKSSN  180
EDKALKPRID TSPEVRNFLV EQMASSLTKD PNFTTALAAA ISGKIFQHNP REKW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21781401374WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.69640.0abscission zone| fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427621.11e-176hypothetical protein CICLE_v10026105mg
RefseqXP_006427622.11e-175hypothetical protein CICLE_v10026105mg
SwissprotQ9SAH72e-82WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLV4SJP81e-175V4SJP8_9R
TrEMBLV4SUN41e-176V4SUN4_9R
STRINGPOPTR_0001s03620.18e-96(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-79WRKY DNA-binding protein 40